PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01882.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 794aa    MW: 88505 Da    PI: 6.4339
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01882.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.92e-23127227198
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+
  Rsa1.0_01882.1_g00004.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfptldytQQPPAQ--ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVTGDS 210
                              99*****************************96555555..8******************************************** PP

                              EEEEE-SSSEE..EEEEE- CS
                       B3  80 vvFkldgrsefelvvkvfr 98 
                              v+F   ++++ +l+++++ 
  Rsa1.0_01882.1_g00004.1 211 VIFI--RNERNQLLLGIRH 227
                              ****..4577777988876 PP

2Auxin_resp1064.5e-35253336183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+t+s F+v+Y+Pr+++seFv ++ k+ ka+  ++vsvGmRf+m fete+ss rr++Gt++g+ dld+v WpnS+Wrs+k
  Rsa1.0_01882.1_g00004.1 253 AAHAAATNSCFTVFYHPRSTSSEFVLPLPKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSVLWPNSHWRSVK 336
                              79*******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-48113256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-40120242IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-21126219No hitNo description
SMARTSM010192.0E-21127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182127229IPR003340B3 DNA binding domain
PfamPF023623.7E-21127227IPR003340B3 DNA binding domain
PfamPF065075.9E-31253336IPR010525Auxin response factor
PfamPF023095.5E-8686773IPR033389AUX/IAA domain
SuperFamilySSF542772.09E-7688764No hitNo description
PROSITE profilePS5174523.118689773IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MNLSSSGFGH QSHEGEKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE  60
VEGHIPNYPT LPPQLICQLH NVTMHADLET DEVYAQMVLQ PLTQEEQKDT FVPIELGTPS  120
KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPTLDYTQ QPPAQELIAK DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVTGDS VIFIRNERNQ LLLGIRHATR PQTIVPSSML  240
SSDSMHIGLL AAAAHAAATN SCFTVFYHPR STSSEFVLPL PKYIKAVFHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDSVLWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT  360
TFPMYPSLFP LRLKRPWHPG ATSYQDSRGD LTWLRGGGAG ENGLLPLNYP SPNVFPWMQQ  420
RLDISLLATD QNQQYQAMLA AGLQNFGGGG GDPLRQQFVH LQEPNHQYLR QQSAAIHNSD  480
LQQHHQQQIP RHLLQAQTQI LSENLPQQNM RREVSNQVAV QAQQPDRVWQ HSDLISPSDF  540
TNNKFTSAAN PVQQQNLSLQ GSGDSSSNLL NFSITGGHSE QLPPTQDWSL KHSHYPETNF  600
FSEPLSLGQA YGRTSPSLEP PPSTQNLSLF GGDSDSGLFL PTTVPRFGNF SADAAADTSS  660
MPLTDSGFQN TALQGTTELA AHGVVEHKEN FVKVYKSGSV GRSLDISRFS SYQELIEELG  720
KMFDIKGLLE DAFRSGWQLV FVDKEDDILL LGDDPWESFV NSVWYIKILS PDDVHKMGGE  780
HGQGSSFPQN LTHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1501635747388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794710.0JN979471.1 Brassica rapa subsp. pekinensis auxin response factor 8-1 (ARF8-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105160.10.0PREDICTED: auxin response factor 8-like
RefseqXP_009105162.10.0PREDICTED: auxin response factor 8-like
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLH9B4D20.0H9B4D2_BRARP; Auxin response factor
STRINGBra004125.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8